completeCellGeneCombs: Find cell lines and perturbations (Connectivity map) where...
In vitkl/regNETcmap: Tools to study transcriptional regulation using perturbation screens followed by transcriptomic profiling (incl. CMAP, Perturb-seq)
Description
Find cell lines and perturbations (Connectivity map) where all pert_iname are present in all cell_id
Usage
1
completeCellGeneCombs(cmap, force_gene_names = F)
Arguments
cmap
object of class 'GCT' [package "cmapR"] with 7 slots containing z-score matrix, perturbation and feature details of the Connectivity map project. Returned by readCMAP or readCMAPsubset
force_gene_names
look at all gene_names but less cell lines
vitkl/regNETcmap documentation built on Feb. 18, 2020, 3:43 a.m.
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Description
Find cell lines and perturbations (Connectivity map) where all pert_iname are present in all cell_id
Usage
1 | completeCellGeneCombs(cmap, force_gene_names = F)
|
Arguments
cmap |
object of class 'GCT' [package "cmapR"] with 7 slots containing z-score matrix, perturbation and feature details of the Connectivity map project. Returned by |
force_gene_names |
look at all |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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