DSC: Dispersion Separability Criterion
In vittoriofortino84/COPS: Clustering algorithms for Omics-driven Patient Stratification
View source: R/evaluation_metrics.R
DSC R Documentation
Dispersion Separability Criterion
Description
Used by TCGA Batch Effects Viewer
https://bioinformatics.mdanderson.org/public-software/tcga-batch-effects/.
Based on https://www.jmlr.org/papers/v5/dy04a.html.
Can be used to measure batch effect.
Usage
DSC(data_matrix, batch_label)
Arguments
data_matrix
numeric matrix, samples on columns
batch_label
categorical variable, must be vector
Value
Returns the DSC of data_matrix with respect to
batch_label as a scalar value
vittoriofortino84/COPS documentation built on Jan. 28, 2025, 3:16 p.m.
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View source: R/evaluation_metrics.R
| DSC | R Documentation |
Dispersion Separability Criterion
Description
Used by TCGA Batch Effects Viewer https://bioinformatics.mdanderson.org/public-software/tcga-batch-effects/. Based on https://www.jmlr.org/papers/v5/dy04a.html. Can be used to measure batch effect.
Usage
DSC(data_matrix, batch_label)
Arguments
data_matrix |
numeric matrix, samples on columns |
batch_label |
categorical variable, must be vector |
Value
Returns the DSC of data_matrix with respect to
batch_label as a scalar value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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