coexpression_network_unweighted: Unweighted gene co-expression network constructor

In vittoriofortino84/COPS: Clustering algorithms for Omics-driven Patient Stratification

Unweighted gene co-expression network constructor

Description

Generates a gene co-expression network by thresholding gene-expression correlations.

Usage

coexpression_network_unweighted(
  dat,
  correlation_method = "spearman",
  cor_threshold = 0.5
)

Arguments

dat	gene expression data, samples on columns
correlation_method	correlation method
cor_threshold	numeric threshold used to define edges/links

Value

igraph object

vittoriofortino84/COPS documentation built on Jan. 28, 2025, 3:16 p.m.