Man pages for vjcitn/BiocRnaHap
explore RNA-seq based haplotyping using Phaser
| ch38to19 | a liftover chain instance for hg38->hg19 |
| ensRsLoc | use ensembl REST API to acquire SNP location for an rsid,... |
| filter_haptab | produce a filtered RNA-haplotype table as GRanges, limiting... |
| geuvEvH | compute a data.frame with GEUVADIS expression for a selected... |
| gsd_vcf | a CompressedVcf instance of 2504 genotypes at snps rs2305480,... |
| HapTab | encapsulate phaser output text tables |
| HG00096_rna_haps | a table of RNA-based haplotype calls derived from phaser |
| look1kg | query 1000 genomes genotypes at pairs of SNP |
| NA06986_rnahaps | a table of RNA-based haplotype calls derived from phaser |
| plotDemo | produce a static view of target boxplot |
| RnaHapSet | encapsulate a list of SNP configurations produced as... |
| rnahapsNearGene | produce a GRanges with RNA haplotypes near a specific gene |
| variant_options | create list of snpids in RNA-defined haplotypes |
