filter_haptab: produce a filtered RNA-haplotype table as GRanges, limiting...
In vjcitn/BiocRnaHap: explore RNA-seq based haplotyping using Phaser
Description
Usage
Arguments
Examples
Description
produce a filtered RNA-haplotype table as GRanges, limiting
to SNP-sets of specific cardinality and (optionally) providing a set
of gene ranges 'nearest' to the initial SNP
Usage
1
2
3
filter_haptab(haptab = BiocRnaHap::NA06986_rnahaps,
genegr = ensembldb::genes(EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75),
varnum_to_use = 2:6, useNearestRubric = FALSE)
Arguments
haptab
data.frame corresponding to phaser haplotypes.txt table
genegr
a GRanges with gene ranges
varnum_to_use
the values of the 'variants' field for which records are retained
useNearestRubric
logical(1) defaults to FALSE
Examples
1
vjcitn/BiocRnaHap documentation built on June 17, 2019, 9:31 p.m.
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Description Usage Arguments Examples
Description
produce a filtered RNA-haplotype table as GRanges, limiting to SNP-sets of specific cardinality and (optionally) providing a set of gene ranges 'nearest' to the initial SNP
Usage
1 2 3 | filter_haptab(haptab = BiocRnaHap::NA06986_rnahaps,
genegr = ensembldb::genes(EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75),
varnum_to_use = 2:6, useNearestRubric = FALSE)
|
Arguments
haptab |
data.frame corresponding to phaser haplotypes.txt table |
genegr |
a GRanges with gene ranges |
varnum_to_use |
the values of the 'variants' field for which records are retained |
useNearestRubric |
logical(1) defaults to FALSE |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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