| $,MSnID-method |
Man page
|
| $,MSnIDFilter-method |
Man page
|
| $<-,MSnID-method |
Man page
|
| $<-,MSnIDFilter-method |
Man page
|
| .add_mod_symbol |
Source code
|
| .assess_missed_cleavages |
Source code
|
| .assess_termini |
Source code
|
| .check_column |
Source code
|
| .check_presense_of_flanking_AAs |
Source code
|
| .compute_accession_coverage |
Source code
|
| .construct_optimization_grid |
Source code
|
| .convert_MSnID_to_MSnSet |
Source code
|
| .get_clean_peptide_sequence |
Source code
|
| .get_filterString |
Source code
|
| .get_filterValues |
Source code
|
| .get_non_AA_characters |
Source code
|
| .get_num_pep_for_fdr |
Source code
|
| .id_quality |
Source code
|
| .is_filterList_valid |
Source code
|
| .map_mod_sites |
Source code
|
| .optimize_filter |
Source code
|
| .optimize_filter.grid |
Source code
|
| .optimize_filter.grid.mclapply |
Source code
|
| .optimize_filter.grid.parLapply |
Source code
|
| .plot_protein_coverage |
Source code
|
| .read_mzIDs.memoized |
Source code
|
| .read_mzIDs.mzR |
Source code
|
| .read_mzIDs.mzR.engine.single.file |
Source code
|
| .remap_accessions |
Source code
|
| .strip_flanking_AAs |
Source code
|
| .strip_modifications_from_peptide |
Source code
|
| MSnID |
Man page
Source code
|
| MSnID-class |
Man page
|
| MSnID-package |
Man page
|
| MSnIDFilter |
Man page
Source code
|
| MSnIDFilter-class |
Man page
|
| [[,MSnID,ANY,ANY-method |
Man page
|
| [[,MSnID-method |
Man page
|
| [[<-,MSnID,ANY,ANY,ANY-method |
Man page
|
| accessions |
Man page
|
| accessions,MSnID-method |
Man page
|
| add_mod_symbol |
Man page
|
| add_mod_symbol,MSnID-method |
Man page
|
| apply_filter |
Man page
|
| apply_filter,MSnID,MSnIDFilter-method |
Man page
|
| apply_filter,MSnID,character-method |
Man page
|
| as.numeric,MSnIDFilter-method |
Man page
|
| assess_missed_cleavages |
Man page
|
| assess_missed_cleavages,MSnID-method |
Man page
|
| assess_termini |
Man page
|
| assess_termini,MSnID-method |
Man page
|
| c_elegans |
Man page
|
| class:MSnID |
Man page
|
| class:MSnIDFilter |
Man page
|
| coerce,MSnID,MSnSet-method |
Man page
|
| coerce,MSnID,data.table-method |
Man page
|
| compute_accession_coverage |
Man page
|
| compute_accession_coverage,MSnID-method |
Man page
|
| correct_peak_selection |
Man page
|
| correct_peak_selection,MSnID-method |
Man page
|
| dim,MSnID-method |
Man page
|
| evaluate_filter |
Man page
|
| evaluate_filter,MSnID-method |
Man page
|
| extract_sequence_window |
Man page
|
| extract_sequence_window,MSnID-method |
Man page
|
| factor_to_str_converter |
Source code
|
| fetch_conversion_table |
Man page
Source code
|
| get_coverage_for_single_accession |
Source code
|
| id_quality |
Man page
|
| id_quality,MSnID-method |
Man page
|
| infer_parsimonious_accessions |
Man page
|
| infer_parsimonious_accessions,MSnID-method |
Man page
|
| length,MSnIDFilter-method |
Man page
|
| map_mod_sites |
Man page
|
| map_mod_sites,MSnID-method |
Man page
|
| map_peptide_position |
Man page
|
| map_peptide_position,MSnID-method |
Man page
|
| mass_measurement_error |
Man page
|
| mass_measurement_error,MSnID-method |
Man page
|
| msnidObj |
Man page
|
| names,MSnID-method |
Man page
|
| names,MSnIDFilter-method |
Man page
|
| optimize_filter |
Man page
|
| optimize_filter,MSnIDFilter,MSnID-method |
Man page
|
| peptides |
Man page
|
| peptides,MSnID-method |
Man page
|
| plot_protein_coverage |
Man page
|
| plot_protein_coverage,MSnID,character-method |
Man page
|
| proteins |
Man page
|
| proteins,MSnID-method |
Man page
|
| psms |
Man page
|
| psms,MSnID-method |
Man page
|
| psms<- |
Man page
|
| psms<-,MSnID,data.frame-method |
Man page
|
| read_mzIDs |
Man page
|
| read_mzIDs,MSnID-method |
Man page
|
| rec_insert |
Source code
|
| recalibrate |
Man page
|
| recalibrate,MSnID-method |
Man page
|
| remap_accessions |
Man page
|
| remap_accessions,MSnID-method |
Man page
|
| remap_fasta_entry_names |
Man page
Source code
|
| report_mods |
Man page
|
| report_mods,MSnID-method |
Man page
|
| show,MSnID-method |
Man page
|
| show,MSnIDFilter-method |
Man page
|
| update,MSnIDFilter-method |
Man page
|
