API for vnminin/phylomap
Phylogenetic Stochastic Mapping
| Global functions | |
|---|---|
| SPARSEmaketreelistMCMC | Source code |
| SPARSEsumstatMCMC | Man page Source code |
| add_labels_DIC_squamate_plot | Source code |
| changemytipstates | Source code |
| combine_DIC_results | Source code |
| correct_AIC_decision_counter | Source code |
| correct_DIC_decision_counter | Source code |
| countgains | Source code |
| countlosses | Source code |
| crazystart1 | Source code |
| create_AIC_results | Source code |
| create_dataframe_for_plotting | Source code |
| divtophy | Source code |
| divtophymap | Source code |
| findroot | Source code |
| get_corHMM_AIC_result | Source code |
| make2sQ | Source code |
| make2stateDIC | Source code |
| make2stateDICm | Source code |
| make4stateDIC | Source code |
| make4stateDICbig | Source code |
| make4stateDICm | Source code |
| make_12_chains | Source code |
| make_squamate_tree | Source code |
| makebpm | Source code |
| makecounts | Source code |
| makemapnames | Source code |
| makemappededge | Source code |
| makenodelist | Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code |
| maketreelistEXP | Source code |
| maketreelistMCMC | Source code |
| maketreelistMCMC2sDICt | Source code |
| maketreelistMCMC_bigtree | Source code |
| maketreelistMCMCbf | Source code |
| maketreelistMCMCks | Source code |
| maketreelistMCMCksDICt | Source code |
| maketreelistMCMCksmt | Source code |
| maketreelistMCMCmt | Source code |
| multhist | Source code |
| myreorder | Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code |
| nodestatesmake | Source code |
| onemapbranch | Source code |
| phylomap | Man page |
| pruningwiseedgeorder | Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code |
| sample2statehistory | Source code |
| samplethebranch | Source code |
| simulate_2_state_tree | Man page Source code |
| simulate_4_state_tree | Man page Source code |
| simulate_estimate | Source code |
| squamate_DIC_plot | Source code |
| statesmake | Source code |
| sumstatEXP | Man page Source code |
| sumstatMCMC | Man page Source code |
| sumstatMCMC2sDICt | Source code |
| sumstatMCMC_bigtree | Man page Source code |
| sumstatMCMCbf | Man page Source code |
| sumstatMCMCks | Man page Source code |
| sumstatMCMCksDICt | Source code |
| sumstatMCMCksmt | Man page Source code |
| sumstatMCMCmt | Man page Source code |
