pruningwiseedgeorder<-function(x){
returnme<-seq(1:dim(x$edge)[1])
y<-reorder(x,order="pruningwise")
for(i in 1:dim(x$edge)[1]){
for(j in 1:dim(x$edge)[1]){
if(x$edge[i,1]==y$edge[j,1]&x$edge[i,2]==y$edge[j,2]) returnme[j]<-i
}
}
return(returnme)
}
makenodelist<-function(x){
rm<-NULL
for(i in 1:(x$Nnode-1)){
rm[i]<-reorder(x,order="pruningwise")$edge[length(x$edge[,1])-2*i,1]
}
return(rm)
}
myreorder<-function(x) reorder(x,order="pruningwise")$edge[dim(x$edge)[1],1]
sumstatMCMCks<-function(z,Q,pid,Omega,N,prior) {
#if(dim(z$edge)[1]>9999) {
# print("too many edges in the tree, the limit is 10,000")
# return()
#}
nen=pruningwiseedgeorder(z)
nodelist=makenodelist(z)
root = myreorder(z)
B=diag(dim(Q)[1])+Q/Omega
ss<-maketreelistMCMCks(z,Q,pid,B,Omega,nen,nodelist,root,N,prior)
#colnames(ss)<-c("time 0","time 1","time 2","time 3","n00","n01","n02","n03","n10","n11","n12","n13","n20","n21","n22","n23","n30","n31","n32","n33","l01","l10","ls","lf","gamma")
return(ss)
}
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