inputList_SizeCompsData: Create an input list for size comps data

In wStockhausen/tcsamFunctions: Functions related to the BSAI Tanner crab stock assessment (2015+)

Create an input list for size comps data

Description

Function to create an input list for size comps data.

Usage

inputList_SizeCompsData(
  dfrZCs = NULL,
  dfrSSs = NULL,
  cutpts = NULL,
  tail_compression = c(0, 0),
  optFit = c("BY_X", "BY_XM"),
  likeType = c("MULTINOMIAL", "DIRICHLET-MULTINOMIAL"),
  likeWgt = 1,
  unitsIn = c("ONES", "MILLIONS"),
  unitsOut = c("MILLIONS", "ONES")
)

Arguments

dfrZCs	: size comps dataframe
dfrSSs	: sample sizes dataframe
cutpts	: vector of cutpoints for size comps
tail_compression	: 2-element vector giving tail compression factors
optFit	: objective function fitting option (e.g., "BY_X","BY_XM")
likeType	: likelihood type ("NORM2", "NORMAL" or "LOGNORMAL")
likeWgt	-likelihood multiplier
unitsIn	: units for input data ("ONES" or "MILLIONS")
unitsOut	: units for output data ("ONES" or "MILLIONS")

Details

See below:

Output list has elements:

• dfrZCs - size comps dataframe

• dfrSSs - sample sizes dataframe

• cutpts - cutpoints for size comps

• tail_compression - 2-element vector giving tail compression factors

• optFit - objective function fitting option

• likeType - likelihood type

• likeWgt - likelihood multiplier

• unitsIn - input units

• unitsOut - output units

Value

a list (see Details).

wStockhausen/tcsamFunctions documentation built on Jan. 28, 2024, 9:01 a.m.