writeTCSAM02_SizeCompsData: Write size composition data to a connection in TCSAM02 input...
In wStockhausen/tcsamFunctions: Functions related to the BSAI Tanner crab stock assessment (2015+)

View source: R/writeTCSAM02_SizeCompsData.R

writeTCSAM02_SizeCompsData

R Documentation

Write size composition data to a connection in TCSAM02 input format

Description

Function to write size composition data to a connection in TCSAM02 input format.

Usage

writeTCSAM02_SizeCompsData(
  con = stdout(),
  dfrZCs = NULL,
  dfrSSs = NULL,
  cutpts = NULL,
  tail_compression = c(0, 0),
  optFit = c("BY_X", "BY_XM"),
  likeType = c("MULTINOMIAL", "DIRICHLET-MULTINOMIAL"),
  likeWgt = 1,
  unitsIn = c("ONES", "MILLIONS"),
  unitsOut = c("MILLIONS", "ONES")
)

Arguments

`con`	: connection to use (default=stdout)
`dfrZCs`	: size comps dataframe to write to connection
`dfrSSs`	: sample size dataframe corresponding to dfrZCs
`cutpts`	: vector of cutpoints that were used to create the size comps
`tail_compression`	: two-element vector of compresssion factors
`optFit`	: objective function fitting option (e.g., "BY_X","BY_XM")
`likeType`	: likelihood type ("MULTINOMIAL" or "DIRICHLET-MULTINOMIAL")
`likeWgt`	: likelihood weight (multiplier)
`unitsIn`	: input catch units ("ONES" or "MILLIONS")
`unitsOut`	: output catch units ("MILLIONS" or "ONES)