writeInputFile_FleetData: Write fleet data (fishery or survey) to a TCSAM input file

In wStockhausen/tcsamFunctions: Functions related to the BSAI Tanner crab stock assessment (2015+)

Write fleet data (fishery or survey) to a TCSAM input file

Description

Function to write fleet data to a TCSAM input file.

Usage

writeInputFile_FleetData(
  con = stdout(),
  fleet = NULL,
  type = c("FISHERY", "SURVEY"),
  closed = NULL,
  lstRC = NULL,
  lstTC = NULL,
  lstDC = NULL,
  lstIC = NULL,
  lstEff = NULL
)

Arguments

con	: connection to write to
fleet	: TCSAM fleet name
type	: fleet type ('FISHERY' or 'SURVEY')
closed	: vector of years when fishery was closed, if fleet is a fishery
lstRC	: list with retained catch information (see Details)
lstTC	: list with total catch information (see Details)
lstDC	: list with discard catch information (see Details)
lstIC	: list with index catch information (see Details)
lstEff	: list with effort data information

Details

Writes fleet-specific data file in TCSAM02 format.

The input lists lstRC, lstTC, lstDC, and lstIC must have the following structure, if not NULL:

• lstAbd - NULL, or the lstAbd input to writeTCSAM02_CatchData() (see inputList_AggregateCatchData())

• lstBio - NULL, or the lstAbd input to writeTCSAM02_CatchData() (see inputList_AggregateCatchData())

• lstZCs - NULL, or the lstAbd input to writeTCSAM02_CatchData() (see inputList_SizeCompsData())

lstEff contains input values passed to writeTCSAM02_EffortData() and must have the following structure (inputList_EffortData()), if not NULL:

• dfr - dataframe with columns 'year' and 'effort'

• avgInterval - averaging interval given in TCSAM02 time block format

• likeType - likelihood type

• likeWgt - likelihood weight

• unitsIn - units for input effort

• unitsOut - units for output effort

Value

Invisibly returns the connection to facilitate piping.

See Also

inputList_AggregateCatchData(), inputList_SizeCompsData(), inputList_EffortData().

wStockhausen/tcsamFunctions documentation built on Jan. 28, 2024, 9:01 a.m.