waldronlab/curatedTCGAData: Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

This package provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects. MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. It also links assay barcodes with patient identifiers, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire multi-'omics experiment.

Getting started

Package details

Bioconductor views CancerData ExperimentHub Homo_sapiens_Data ReproducibleResearch
Maintainer
LicenseArtistic-2.0
Version1.7.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("waldronlab/curatedTCGAData")
waldronlab/curatedTCGAData documentation built on July 22, 2019, 12:08 a.m.