locusdef.danRer10.1kb: locusdef.danRer10.1kb locus definition

In wangk4/chipenrich.data: Companion package to chipenrich

Description

A LocusDefinition where a gene locus is defined within 1kb upstream and downstream of the TSS.

Usage

locusdef.danRer10.1kb

Format

A LocusDefinition object with the following slots:

granges

A GRanges of the locus definitions with mcols for Entrez Gene ID gene_id and gene symbol symbol

dframe

A data.frame of the locus definitions with columns for chr, start, end, gene_id, and symbol

genome.build

A character indicating the genome build. In this case, danRer10.

organism

A character indicating the organism name. In this case, Danio rerio.

Details

Built on Fri Apr 13 09:54:25 2018.

Source

R packages: TxDb.Drerio.UCSC.danRer10.refGene_3.4.2 and org.Dr.eg.db_3.5.0.

wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.