locusdef.rn5.nearest_gene: locusdef.rn5.nearest_gene locus definition

Description Usage Format Details Source

Description

A LocusDefinition where a gene locus is defined as the region spanning the midpoints between adjacent TSSs and TESs.

Usage

1

Format

A LocusDefinition object with the following slots:

granges

A GRanges of the locus definitions with mcols for Entrez Gene ID gene_id and gene symbol symbol

dframe

A data.frame of the locus definitions with columns for chr, start, end, gene_id, and symbol

genome.build

A character indicating the genome build. In this case, rn5.

organism

A character indicating the organism name. In this case, Rattus norvegicus.

Details

Built on Fri Apr 13 09:52:16 2018.

Source

R packages: TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.2 and org.Rn.eg.db_3.5.0.


wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.