peaks_E2F4: ChIP-seq Peaks for the E2F4 Transcription Factor
In wangk4/chipenrich.data: Companion package to chipenrich
Description
Usage
Format
Source
Examples
Description
A dataset containing the binding locations (peaks) of the transcription factor E2F4 called from a ChIP-seq experiment
Usage
1
Format
A data frame containing 16,245 peak binding locations. Each row is a peak location, and the 3 variables/columns are chromosome, start peak coordinate, and end peak coordinate.
Peak coordinates are in hg19 (UCSC) coordinates.
Source
The data and information regarding the experiment can be found in the following publication:
Lee, B. K., A. A. Bhinge, et al. (2011). "Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis." Nucleic Acids Res 39(9): 3558-3573.
Examples
1
2
3
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5
# Load E2F4 peak data.
data(peaks_E2F4)
# Print the first 10 peaks in the dataset.
print(head(peaks_E2F4))
wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.
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Description Usage Format Source Examples
Description
A dataset containing the binding locations (peaks) of the transcription factor E2F4 called from a ChIP-seq experiment
Usage
1 |
Format
A data frame containing 16,245 peak binding locations. Each row is a peak location, and the 3 variables/columns are chromosome, start peak coordinate, and end peak coordinate. Peak coordinates are in hg19 (UCSC) coordinates.
Source
The data and information regarding the experiment can be found in the following publication:
Lee, B. K., A. A. Bhinge, et al. (2011). "Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis." Nucleic Acids Res 39(9): 3558-3573.
Examples
1 2 3 4 5 | # Load E2F4 peak data.
data(peaks_E2F4)
# Print the first 10 peaks in the dataset.
print(head(peaks_E2F4))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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