peaks_H3K4me3_GM12878: ChIP-seq Peaks for the Histone Modification H3K4me3 in...
In wangk4/chipenrich.data: Companion package to chipenrich
Description
Usage
Format
Source
Examples
Description
A dataset containing the binding locations (peaks) of the histone modification H3K4me3 called from a ChIP-seq experiment in the GM12878 cell line
Usage
1
Format
A data frame containing 57,476 peak binding locations. Each row is a peak location, and the 3 variables/columns are chromosome, start peak coordinate, and end peak coordinate.
Peak coordinates are in hg19 (UCSC) coordinates.
Source
The data and information regarding the experiment can be found at the following ENCODE URL:
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone/wgEncodeBroadHistoneGm12878H3k04me3StdPkV2.broadPeak.gz
Examples
1
2
3
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5
# Load H3K4me3 in GM12878 peak data.
data(peaks_H3K4me3_GM12878)
# Print the first 10 peaks in the dataset.
print(head(peaks_H3K4me3_GM12878))
wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.
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Description Usage Format Source Examples
Description
A dataset containing the binding locations (peaks) of the histone modification H3K4me3 called from a ChIP-seq experiment in the GM12878 cell line
Usage
1 |
Format
A data frame containing 57,476 peak binding locations. Each row is a peak location, and the 3 variables/columns are chromosome, start peak coordinate, and end peak coordinate. Peak coordinates are in hg19 (UCSC) coordinates.
Source
The data and information regarding the experiment can be found at the following ENCODE URL:
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone/wgEncodeBroadHistoneGm12878H3k04me3StdPkV2.broadPeak.gz
Examples
1 2 3 4 5 | # Load H3K4me3 in GM12878 peak data.
data(peaks_H3K4me3_GM12878)
# Print the first 10 peaks in the dataset.
print(head(peaks_H3K4me3_GM12878))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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