tss.mm9: tss.mm9 TSS locations
In wangk4/chipenrich.data: Companion package to chipenrich
Description
Usage
Format
Source
Description
A GRanges with all the TSSs for mm9. Primarily used in the assign_peaks() function to report distance of a peak to the nearest TSS. Also used to build the QC plot with distribution of peaks to TSSs.
Usage
1
Format
A GRanges object with the following mcols:
- gene_id
The Entrez ID for the TSS
- symbol
The gene symbol for the TSS
Source
R packages: TxDb.Mmusculus.UCSC.mm9.knownGene_3.2.2 and org.Mm.eg.db_3.5.0. GENCODE resources: ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_mouse/release_M9/gencode.vM9.annotation.gff3.gz and ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_mouse/release_M9/gencode.vM9.metadata.EntrezGene.gz
wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.
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Description Usage Format Source
Description
A GRanges with all the TSSs for mm9. Primarily used in the assign_peaks() function to report distance of a peak to the nearest TSS. Also used to build the QC plot with distribution of peaks to TSSs.
Usage
1 |
Format
A GRanges object with the following mcols:
- gene_id
The Entrez ID for the TSS
- symbol
The gene symbol for the TSS
Source
R packages: TxDb.Mmusculus.UCSC.mm9.knownGene_3.2.2 and org.Mm.eg.db_3.5.0. GENCODE resources: ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_mouse/release_M9/gencode.vM9.annotation.gff3.gz and ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_mouse/release_M9/gencode.vM9.metadata.EntrezGene.gz
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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