Man pages for wangxlab/uniConSigPreCal
Fast calculation of uniConSig and CSEA
| cal_conceptWeight | calculate concept weight |
| cal_cumNorWeight | Calculate cumulative normalized weights |
| cal_uniConSig | calculate uniConSig using pre-calculated files |
| cal_weightMatrix | load concept database from gmt, calculate concept weights,... |
| construct_permuList | contruct permutation list |
| CSEA | Calculate CSEA |
| findES | Find the highest absolute value of weights |
| get_data_uniConSigPreCal | Fetch pre-calculated data from github for uniConSig... |
| pathway.c2cp | Pathway gene sets of C2CP from MSigDB |
| pathway.hallmark | Pathway gene sets of HALLMARK from MSigDB |
| perm_weightedKS_ofCSEA | Calculate the permutations of random on-set genes |
| trList.cgc | Cancer gene sets from Cancer Gene Census |
| uniConSigPreCal-package | Calculate uniConSig scores using pre-calculated files |
| weightedKS_ofCSEA | Calculate weighted random walk k-s test for CSEA |
