perm_weightedKS_ofCSEA: Calculate the permutations of random on-set genes
In wangxlab/uniConSigPreCal: Fast calculation of uniConSig and CSEA

For a certain weighted gene list(weights), randomly select a certain number(numOnList) of genes to be on-set genes, and calculate ES

1	perm_weightedKS_ofCSEA(weights, numOnList, nPermu = 1000)

`weights`	A vector of weights. The name of each value in the vector is it's Entrez gene ID
`numOnList`	An positive integer, indicating the number of genes to be randomly selected
`nPermu`	Number of permutations, default 1000

A numeric vector of enrichment scores of randomly selected genes

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weight.call<-c(0.1,0.2,0.5,0.7,0.9,1)
names(weight.call)<-1:6
test.tmp<-perm_weightedKS_ofCSEA(weight.call,6)

wangxlab/uniConSigPreCal documentation built on May 23, 2019, 9:31 a.m.

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