cal_uniConSig: calculate uniConSig using pre-calculated files

In wangxlab/uniConSigPreCal: Fast calculation of uniConSig and CSEA

Description

calculate the functional associations between a single gene and a training gene set stored in trList.

Usage

cal_uniConSig(trList, preCal = preCal.data)

Arguments

trList	A vector containing all the training gene ids.
preCal	Default using a small subset of the whole pre-calculation file. To do full calculation, see the examples

Value

A matrix with 3 columns: gene ID, gene Name, and uniConSig score

Examples

#For customized training list:
trList.call<-1:10 #read customized training list
result<-cal_uniConSig(trList.call) #calculate uniConSig
#To do full calculation:
#preCal.local<-get_data_uniConSigPreCal()
#load(preCal.local)
#result<-cal_uniConSig(trList.call,preCal=preCal.data.all)
#head(result) #examine the result

wangxlab/uniConSigPreCal documentation built on May 23, 2019, 9:31 a.m.