RNA-Seq Simulation with Absolute Counts

add_spikeins | importFrom utils data |

calculate_consistency | Calculate Consistency of Relative vs Absolute Changes |

calculate_rel_consistency | Calculate Consistency of Logratio Data |

calculate_sizes | This function calculates size factors for use with the... |

ERCC92_data | ERCC ExFold RNA Spike-in Data |

ERCC92_seqs | ERCC ExFold RNA Spike-in Sequences |

generate_abs_changes | Generate Absolute Changes |

run_abs_simulation | Run a copy number simulation |

summarize_abs_sim_runs | Summarize a group of copy number simulations |

tpms_to_expected_reads | Convert TPMs to Expected Fragments |

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