calculate_sizes: This function calculates size factors for use with the...
In warrenmcg/absSimSeq: RNA-Seq Simulation with Absolute Counts
Description
This function calculates size factors for use with the polyester simulation
using real data.
In a negative binomial distribution, if the size is r, then the variance of
the NB random variable is V = mean + mean^2 / r
It is estimated using DESeq2's estimateDispersions function.
Note: Dispersion = 1 / r
Usage
1
2
calculate_sizes(counts = NULL, s2c, design, reads_pt = NULL,
fc = NULL, single_value = TRUE, min_dispersion = 1e-06)
warrenmcg/absSimSeq documentation built on May 29, 2019, 9:57 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This function calculates size factors for use with the polyester simulation
using real data.
In a negative binomial distribution, if the size is r, then the variance of
the NB random variable is V = mean + mean^2 / r
It is estimated using DESeq2's estimateDispersions function.
Note: Dispersion = 1 / r
Usage
1 2 | calculate_sizes(counts = NULL, s2c, design, reads_pt = NULL,
fc = NULL, single_value = TRUE, min_dispersion = 1e-06)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.