summarize_abs_sim_runs: Summarize a group of copy number simulations

Description Usage Arguments Value

Description

This function summarizes for each simulation the consistency of the fold changes comparing copy numbers to TPMs, and then the consistency comparing the ALR transformation of the copy numbers versus that of the TPMs.

Usage

1
summarize_abs_sim_runs(abs_sim_runs_list, num_runs, de_probs, dir_probs)

Arguments

abs_sim_runs_list,

the output from run_abs_simulation

num_runs,

the number of simulations

de_probs,

vector of probabilities of differential expression

dir_probs,

vector of probabilities of differential expression being increased, given a transcript that is changing

Value

a data frame with the following columns:


warrenmcg/absSimSeq documentation built on May 29, 2019, 9:57 a.m.