API for wenjie1991/CellBarcode
Cellular DNA Barcode Analysis toolkit

Global functions
*.BarcodeObj	Man page
+.BarcodeObj	Man page
-.BarcodeObj	Man page
BarcodeObj	Man page
BarcodeObj-class	Man page
BarcodeQc	Man page
BarcodeQc-class	Man page
BarcodeQcSet	Man page
BarcodeQcSet-class	Man page
CellBarcode	Man page
[,BarcodeQcSet,ANY,ANY,ANY-method	Man page
bc_2df	Man page
bc_2df,BarcodeObj-method	Man page
bc_2dt	Man page
bc_2dt,BarcodeObj-method	Man page
bc_2matrix	Man page
bc_2matrix,BarcodeObj-method	Man page
bc_auto_cutoff	Man page
bc_auto_cutoff,BarcodeObj-method	Man page
bc_barcodes	Man page
bc_barcodes,BarcodeObj-method	Man page
bc_cleanBc	Man page
bc_cleanBc,BarcodeObj-method	Man page
bc_create_BarcodeObj	Man page
bc_create_BarcodeObj,data.frame-method	Man page
bc_create_BarcodeObj,matrix-method	Man page
bc_cure_cluster	Man page
bc_cure_cluster,BarcodeObj-method	Man page
bc_cure_depth	Man page
bc_cure_depth,BarcodeObj-method	Man page
bc_cure_umi	Man page
bc_cure_umi,BarcodeObj-method	Man page
bc_extract	Man page
bc_extract,DNAStringSet-method	Man page
bc_extract,ShortReadQ-method	Man page
bc_extract,character-method	Man page
bc_extract,data.frame-method	Man page
bc_extract,integer-method	Man page
bc_extract,list-method	Man page
bc_extract_metadata	Source code
bc_extract_sc_bam	Man page
bc_extract_sc_fastq	Man page
bc_extract_sc_sam	Man page
bc_find_depth_cutoff_point	Source code
bc_merge	Man page
bc_merge,BarcodeObj,BarcodeObj-method	Man page
bc_messyBc	Man page
bc_messyBc,BarcodeObj-method	Man page
bc_meta	Man page
bc_meta,BarcodeObj-method	Man page
bc_meta<-	Man page
bc_meta<-,BarcodeObj-method	Man page
bc_names	Man page
bc_names,BarcodeObj-method	Man page
bc_names,BarcodeQcSet-method	Man page
bc_names<-	Man page
bc_names<-,BarcodeObj,character-method	Man page
bc_names<-,BarcodeQcSet,ANY-method	Man page
bc_obj	Man page
bc_plot_count	Man page
bc_plot_count,BarcodeObj-method	Man page
bc_plot_draw_pair	Source code
bc_plot_draw_single	Source code
bc_plot_mutual	Man page
bc_plot_mutual,BarcodeObj-method	Man page
bc_plot_pair	Man page
bc_plot_pair,BarcodeObj-method	Man page
bc_plot_seqQc	Man page
bc_plot_seqQc,BarcodeQc-method	Man page
bc_plot_seqQc,BarcodeQcSet-method	Man page
bc_plot_single	Man page
bc_plot_single,BarcodeObj-method	Man page
bc_process_metadata	Source code
bc_process_sample_name	Source code
bc_seq_filter	Man page
bc_seq_filter,DNAStringSet-method	Man page
bc_seq_filter,ShortReadQ-method	Man page
bc_seq_filter,character-method	Man page
bc_seq_filter,data.frame-method	Man page
bc_seq_filter,integer-method	Man page
bc_seq_filter,list-method	Man page
bc_seq_qc	Man page
bc_seq_qc,DNAStringSet-method	Man page
bc_seq_qc,ShortReadQ-method	Man page
bc_seq_qc,character-method	Man page
bc_seq_qc,data.frame-method	Man page
bc_seq_qc,integer-method	Man page
bc_seq_qc,list-method	Man page
bc_seqqc	Source code
bc_splitVDJ	Man page Source code
bc_subset	Man page
bc_subset,BarcodeObj-method	Man page
bc_summary_barcode	Man page
bc_summary_barcode,BarcodeObj-method	Man page
bc_summary_seqQc	Man page
bc_summary_seqQc,BarcodeQcSet-method	Man page
check_sample_name	Source code
count_BarcodeObj	Source code
format,BarcodeObj-method	Man page
get_base_freq_per_cycle	Source code
get_base_quality_per_cycle	Source code
ifnullelse	Source code
is_pure_dataframe	Source code
parse_10x_sam	Man page Source code
plot_base_percentage_distribution	Source code
plot_lorenz_curve	Source code
plot_reads_depth_distribution	Source code
process_sc_list	Source code
read_fastq	Source code
read_fastq_gz	Source code
read_fastq_gz2	Source code
seq_correct	Man page Source code
show,BarcodeObj-method	Man page
show,BarcodeQc-method	Man page
show,BarcodeQcSet-method	Man page
splitVDJ1seq	Source code
subset,BarcodeQcSet-method	Man page