bc_create_BarcodeObj: Create a BarcodeObj object from extracted barcodes data

In wenjie1991/CellBarcode: Cellular DNA Barcode Analysis toolkit

Create a BarcodeObj object from extracted barcodes data

Description

Create a BarcodeObj object from extracted barcodes data

Usage

bc_create_BarcodeObj(x, sample_name = NULL, metadata = NULL, ordered = TRUE)

## S4 method for signature 'matrix'
bc_create_BarcodeObj(x, sample_name = NULL, metadata = NULL)

## S4 method for signature 'data.frame'
bc_create_BarcodeObj(x, sample_name = NULL, metadata = NULL)

Arguments

x	The barcodes data, it can be matrix, data.frame with each row as a barcode each column as a sample. The row names should be given as the barcode sequences, and the column names can be given as the sample names.
sample_name	A character vector, optional, specifying the sample name.
metadata	A data.frame, optional, specifying the metadata of each sample. The row names of the metadata should be the same as the sample names.
ordered	A logical value. If the value is true, the return barcodes (UMI-barcode tags) are sorted by the read counts.

Value

A BarcodeObj object.

Examples

data(bc_obj)
m = bc_2matrix(bc_obj)
bc_create_BarcodeObj(m)

wenjie1991/CellBarcode documentation built on Dec. 20, 2024, 9:52 a.m.