Files in wenjie1991/CellBarcode
Cellular DNA Barcode Analysis toolkit
.Rbuildignore
.github/workflows/debug.yml
.github/workflows/r.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/AllGenerics.R
R/CellBarcode.R
R/RcppExports.R
R/class-BarcodeObj.R
R/class-BarcodeQc.R
R/function-single_cell_seq.R
R/function-verify_seq.R
R/method-BarcodeObj.R
R/method-cure_barcode.R
R/method-extract_barcode.R
R/method-plot_barcode.R
R/method-seqQc.R
R/method-summary_barcode.R
README.md
data/bc_obj.RData
inst/CITATION
inst/extdata/mef_test_data/5290_10_BCM_195_mef_mixb_GTCATTG_S11_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_1_BCM_50000_mef_mixa_GTTCTCC_S2_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_2_BCM_50000_mef_mixb_GATGTGT_S5_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_3_BCM_12500_mef_mixa_TGCCTTG_S4_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_4_BCM_12500_mef_mixb_TAACTGC_S8_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_5_BCM_3125_mef_mixa_GCTTCCA_S9_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_6_BCM_3125_mef_mixb_TGTGAGT_S7_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_7_BCM_781_mef_mixa_CCTTACC_S12_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_8_BCM_781_mef_mixb_CGTATCC_S13_R1_001.fastq.gz
inst/extdata/mef_test_data/5290_9_BCM_195_mef_mixa_GTACTGT_S14_R1_001.fastq.gz
inst/extdata/scRNASeq_10X.bam
inst/extdata/scRNASeq_10X.sam
inst/extdata/simple.fq
man/BarcodeObj.Rd
man/CellBarcode.Rd
man/bc_2df.Rd
man/bc_auto_cutoff.Rd
man/bc_barcodes.Rd
man/bc_cleanBc.Rd
man/bc_create_BarcodeObj.Rd
man/bc_cure_cluster.Rd
man/bc_cure_depth.Rd
man/bc_cure_umi.Rd
man/bc_extract.Rd
man/bc_extract_sc_fastq.Rd
man/bc_extract_sc_sam.Rd
man/bc_messyBc.Rd
man/bc_meta.Rd
man/bc_names.Rd
man/bc_obj.Rd
man/bc_plot_count.Rd
man/bc_plot_mutual.Rd
man/bc_plot_pair.Rd
man/bc_plot_single.Rd
man/bc_seq_filter.Rd
man/bc_seq_qc.Rd
man/bc_splitVDJ.Rd
man/bc_subset.Rd
man/bc_summary_barcode.Rd
man/bc_summary_seqQc.Rd
man/format.Rd
man/parse_10x_sam.Rd
man/seq_correct.Rd
man/show.Rd
man/subset.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/lib_10X_barcode.cpp
src/lib_clustering.cpp
src/lib_read_seq.cpp
tests/testthat.R
tests/testthat/_snaps/BarcodeObj.md
tests/testthat/_snaps/describ.md
tests/testthat/_snaps/qc.md
tests/testthat/test-BarcodeObj.R
tests/testthat/test-describ.R
tests/testthat/test-extract.R
tests/testthat/test-filtering.R
tests/testthat/test-main.R
tests/testthat/test-qc.R
vignettes/.gitignore
vignettes/Barcode_in_10X_scRNASeq.Rmd
vignettes/UMI_VDJ_Barcode.Rmd
