Man pages for wfforrest/maeve
Modeling Accessories Enabling Visualization of Experiments
| abbreviate_factor | Abbreviate a factor. |
| approximate_first_derivative | Approximate the first derivative of a spline passing through... |
| auc_by_id | Calculate ID-level area-under-curve (AUC) summaries from raw... |
| bootstrap_parallel | Employ *parallel* parametric bootstrap to estimate rapidly... |
| check_basis_vec_error | Check model fitting for a basis_vec-count-related error and... |
| check_option_names | Check optional functional argument parameter names. |
| check_study_data_frame | Check various characteristics of the study data frame before... |
| check_trans_func | Check the transformation and inverse transformation... |
| compare_groups | Compare groups from fitted models and return confidence... |
| construct_design_matrix_from_basis | Make a design matrix from a grouping factor and numeric time... |
| construct_gam_formula | Make a gam formula with the basis_vec number provided. |
| construct_newdata | Construct a data.frame from which to predict model values. |
| determine_Effect_Duration | Determine the duration of effect for each treatment |
| determine_EOS_CR | Determine whether each identifier has a complete response... |
| determine_PR | Determine whether each identifier has a complete response... |
| draw_noise | Create a ggplot2 object with root-mean-square prediction... |
| draw_overlay | Create a ggplot2 object with model overlay fits from a maeve... |
| draw_spline_basis | Draw spline basis vector values evaluated at abcissa values... |
| draw_study | Create a ggplot2 object with raw longitudinal data and... |
| draw_waterfall | Create a ggplot2 object with a waterfall plot from a maeve... |
| estimate_log_odds | Estimate the log odds ratio and stanard error for counts of... |
| extract_random_effects | Extract random intercept and slope effects from lmerMod and /... |
| extract_spline_basis | Extract spline basis vector values evaluated at abcissa... |
| fact_to_frac | swap each occurrence of a factor with a level-specific number... |
| freeze_factor_levels | re-order factor levels in a data frame to their current... |
| gdc0084_temo_01 | A data.frame with longitudinal measurements from a... |
| generate_Effect_Duration_summary_statistics | Create a list with Effect_Duration summary statistics |
| generate_summary_table | Create a summary table making Dunnett comparisons. |
| generate_TGI_summary_statistics | Create a list with TGI and TGI_baseline summary statistics |
| get_lmer_linfct | Return a matrix of linear contrasts, intended for use in... |
| get_xrange | Return x-range for a given group |
| grid_by_trace | Interpolate multiple longitudinally traced patterns of... |
| impute_NA_covariate | Impute / copy over missing covariate values in a data.frame |
| interpolate_time_to_threshold | Interpolate the first time at which a group's fitted curve... |
| lead_char | Add a leading character to equalize string lengths |
| leia | Integrate AUC for curves from a multigroup GAM |
| maeve_defaults | Return default valus of global options for maeve |
| maeve_options | Set or get options for maeve |
| maeve_reset | Reset global options for maeve |
| make_basis_matrix | Make a matrix for a linear (mixed) model with known basis... |
| make_confint | Estimate confidence intervals for contrasts from... |
| models_in_list | Estimate linear mixed and / or gamm4 and/or piecewise linear... |
| model_study | Fit longitudinal models to and return a list with models,... |
| normalize_to_first_timepoint | Normalize a time-indexed vector of values its first value. |
| palb_temo_01 | A data.frame with longitudinal measurements from a... |
| permute_study | Create a data frame with group_name assignments permuted... |
| pia | Integrate AUC for curves from a multigroup piecewise or... |
| predict_study | Take fit longitudinal models and raw data and return data... |
| prob_of_instant_dropout | Compute probability of dropout just after a time point based... |
| round_numerics | Round all numeric columns in a data frame to a given number... |
| simlong | Simulate longitudinal data on an equally spaced grid. |
| simpson_coefficients | Find coefficients used in Simpson's approximation for... |
| splice_color_order | splice color ordering factor to rotate across groups. |
| summarize_by_id | Calculate ID-level longitudinal summaries (linear slope,... |
| swap_columns | Swap positions (so names and values both) for two columns... |
| tally_study | Calculate group-level summaries based solely on raw data... |
| trim_final_colon | Remove any trailing ":" colon from each element of a... |
| truncate_numeric | Truncate values in a numeric vector, logically or... |
| truncate_study | Truncate x-range for a data-frame based on x-axis values and... |
| vismodegib | A data.frame with longitudinal measurements from a dose... |
| window_by_id | Restrict longitudinal data to a range, interpolating at... |
