Description Usage Arguments Value Author(s) See Also Examples
Input is the name of the glht object and a list containing it. This choice reflects how the function is usually used in the workflow.
1 2 3 4 5 6 7 8 9 | make_confint(
glht_obj_name,
glht_obj_list,
conf_level = 0.95,
adjustment_method = c("single-step", "Shaffer", "Westfall", "free", "holm",
"hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"),
extended_output = FALSE,
round_estimate = TRUE
)
|
glht_obj_name |
character string with name of list component containing the glht object. |
glht_obj_list |
list containing a glht object. |
conf_level |
numeric. What level of confidence intervals should be returned? Passed directly to stats::confint(). |
adjustment_method |
character string specifying a method for p-value adjustment. Setting to 'none' will return unadjusted p-values and confidence intervals. Setting to anything else (the default is 'single_step') will implement a particular p-value adjustment from multcomp. Although the p-value adjustment method varies for different options of this parameter, all the options other than 'none' will return the same FWER-adjusted confidence intervals implemented via setting "calpha = multcomp::adjusted_calpha()" in "multcomp::confint.glht()". Setting adjustment_method = 'none' will return confidence intervals with "calpha = multcomp::univariate_calpha()" in "multcomp:::confint.glht()". |
extended_output |
logical determining whether to compute extra output to return to a DIVOS summary table. |
round_estimate |
logical determining whether to pass two data.frames through maeve::round_numerics() before merging on a numeric column. |
a data.frame
Bill Forrest forrest@gene.com
1 | cat('Currently no working examples for maeve:::make_confint().')
|
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