calc_exp_LLR | R Documentation |
Calculate LLR for an expression HMM
calc_exp_LLR( Y_obs, lambda_ref, d, phi_mle, mu = NULL, sig = NULL, alpha = NULL, beta = NULL )
Y_obs |
numeric vector Gene expression counts |
lambda_ref |
numeric vector Reference expression levels |
d |
numeric vector Total library size |
phi_mle |
numeric MLE of expression fold change phi (alternative hypothesis) |
mu |
numeric Mean parameter for the PLN expression model |
sig |
numeric Dispersion parameter for the PLN expression model |
alpha |
numeric Hyperparameter for the gamma poisson model (not used) |
beta |
numeric Hyperparameter for the gamma poisson model (not used) |
numeric Log-likelihood ratio
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.