exp_hclust: Run smoothed expression-based hclust

In whtns/numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

Run smoothed expression-based hclust

Description

Run smoothed expression-based hclust

Usage

exp_hclust(
  count_mat,
  lambdas_ref,
  gtf,
  sc_refs = NULL,
  window = 101,
  ncores = 1,
  verbose = TRUE
)

Arguments

count_mat	dgCMatrix Gene counts
lambdas_ref	matrix Reference expression profiles
gtf	dataframe Transcript GTF
sc_refs	named list Reference choices for single cells
window	integer Sliding window size
ncores	integer Number of cores
verbose	logical Verbosity
df_allele	dataframe Alelle counts

whtns/numbat documentation built on Nov. 8, 2022, 10:48 a.m.