cnv_heatmap: Plot CNV heatmap

In whtns/numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

Plot CNV heatmap

Description

Plot CNV heatmap

Usage

cnv_heatmap(
  segs,
  var = "group",
  label_group = TRUE,
  legend = TRUE,
  exclude_gap = TRUE,
  genome = "hg38"
)

Arguments

segs	dataframe Segments to plot. Need columns "seg_start", "seg_end", "cnv_state"
var	character Column to facet by
label_group	logical Label the groups
legend	logical Display the legend
exclude_gap	logical Whether to mark gap regions
genome	character Genome build, either 'hg38' or 'hg19'

Value

ggplot Heatmap of CNVs along the genome

Examples

p = cnv_heatmap(segs_example)

whtns/numbat documentation built on Nov. 8, 2022, 10:48 a.m.