Man pages for wiscstatman/Rolemodel
Gene-set analysis via MFA
| bp | MCMC with bipartite graph |
| bpTable | Wrapper for MCMC with bipartite graph |
| estP | Estimate p using 'mgsa' |
| gs2edge | Create Gene set matrices |
| I2edge | Create edge data frame from gene - geneset indicator matrix |
| ILP | Perform an integer linear programming |
| influenza | Example data set |
| npc | Example data set |
| optimalRM | Extract wholes in the smaller incidence matrix |
| rmPlot | Display an image of enriched gene sets by MFA analysis |
| rmTable | One single call function to run both MAP and MCMC analysis... |
| Rolemodel | One single call function to run both MAP and MCMC analysis... |
| sequentialRM | The sequential approach |
| shrinkRM | Shrink the size of the incidence matrix |
| subRM | Trim the incidence matrix |
| t2d | Example data set |
| T2D_genelist | Example input gene list |
