Gene-set analysis via MFA

bp | MCMC with bipartite graph |

bpTable | Wrapper for MCMC with bipartite graph |

estP | Estimate p using 'mgsa' |

gs2edge | Create Gene set matrices |

I2edge | Create edge data frame from gene - geneset indicator matrix |

ILP | Perform an integer linear programming |

influenza | Example data set |

npc | Example data set |

optimalRM | Extract wholes in the smaller incidence matrix |

rmPlot | Display an image of enriched gene sets by MFA analysis |

rmTable | One single call function to run both MAP and MCMC analysis... |

Rolemodel | One single call function to run both MAP and MCMC analysis... |

sequentialRM | The sequential approach |

shrinkRM | Shrink the size of the incidence matrix |

subRM | Trim the incidence matrix |

t2d | Example data set |

T2D_genelist | Example input gene list |

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