Description Usage Arguments Details Value Author(s) References Examples

Trim the incidence matrix using two parameters n.low and n.up.

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`I` |
The incidence 0-1 matrix with unique row and column names, where rows are parts (genes) and columns are wholes (gene-sets). |

`n.low` |
The lower bound of the sums of columns in the incidence matrix. |

`n.up` |
The upper bound of the sums of columns in the incidence matrix. |

Trim the size of the incidence matrix for the computation via integer linear programming (ILP). The suggested values are n.low = 5 and n.up = 50.

Return the new incidence matrix after trimming.

Zhishi Wang, Michael Newton and Subhrangshu Nandi.

Zhishi W., Qiuling H., Bret L. and Michael N.: A multi-functional analyzer uses parameter constaints to improve the efficiency of model-based gene-set analysis (2013).

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wiscstatman/Rolemodel documentation built on May 28, 2017, 4:34 a.m.

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