bpTable: Wrapper for MCMC with bipartite graph

In wiscstatman/Rolemodel: Gene-set analysis via MFA

Description

Ordered subset of "whole" results from bp

Usage

bpTable(bpout, pr = 0.5)

Arguments

bpout	data frame, output from bp
pr	numeric, lower bound of ActiveProbability for subsetting, default is pr=0.5

Details

See bp

Value

data frame with "whole" results, ordered by ActiveProbability, subsetted for ActiveProbability > pr

Author(s)

Aimee Teo Broman, Zhishi Wang

See Also

gs2edge bp

Examples

library(org.Hs.eg.db)
## idlist <- sample(mappedRkeys(org.Hs.egSYMBOL),1000)
## eout <- gs2edge(idlist,n.upp=30,idtype="SYMBOL",lib="org.Hs.eg")

## bpout <- bp(whole=colnames(eout$I),part=eout$y,edge=eout$edge)

## bpTable(bpout,pr=0.3)

wiscstatman/Rolemodel documentation built on May 4, 2019, 6:32 a.m.