Files in wmacnair/psupertime
Psupertime is supervised pseudotime for single cell RNAseq data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/psupertime.R
R/psupertime_plots.R
README.md
data/acinar_hvg_sce.rda
data/tf_human.rda
data/tf_mouse.rda
inst/extdata/psuperlogo.png
man/dot-calc_clusters_dt.Rd
man/dot-calc_expressed_genes.Rd
man/dot-calc_hvg_genes.Rd
man/dot-check_conf_params.Rd
man/dot-check_params.Rd
man/dot-check_x.Rd
man/dot-check_y.Rd
man/dot-do_topgo_for_cluster.Rd
man/dot-get_test_idx.Rd
man/dot-get_tf_list.Rd
man/dot-glmnetcr_propn.Rd
man/dot-make_best_beta.Rd
man/dot-make_col_vals.Rd
man/dot-make_plot_dt.Rd
man/dot-make_x_data.Rd
man/dot-psummarize.Rd
man/dot-restrict_to_y_labels.Rd
man/dot-select_genes.Rd
man/double_psupertime.Rd
man/plot_double_psupertime.Rd
man/plot_double_psupertime_confusion.Rd
man/plot_double_psupertime_contour.Rd
man/plot_double_psupertime_genes.Rd
man/plot_go_results.Rd
man/plot_heatmap_of_gene_clusters.Rd
man/plot_identified_gene_coefficients.Rd
man/plot_identified_genes_over_psupertime.Rd
man/plot_labels_over_psupertime.Rd
man/plot_new_data_over_psupertime.Rd
man/plot_predictions_against_classes.Rd
man/plot_profiles_of_gene_clusters.Rd
man/plot_specified_genes_over_psupertime.Rd
man/plot_train_results.Rd
man/project_onto_psupertime.Rd
man/psupertime.Rd
man/psupertime_go_analysis.Rd
man/psupertime_go_analysis_old.Rd
man/psupertime_plot_all.Rd
man/tf_human.Rd
man/tf_mouse.Rd
psupertime.Rproj
tests/testthat.R
tests/testthat/test-01_basic_tests.R
vignettes/.gitignore
vignettes/psuper_intro.Rmd
