plot_specified_genes_over_psupertime: Plots profiles of hand-selected genes against psupertime.

In wmacnair/psupertime: Psupertime is supervised pseudotime for single cell RNAseq data

Description

Plots profiles of hand-selected genes against psupertime.

Usage

plot_specified_genes_over_psupertime(
  psuper_obj,
  extra_genes,
  label_name = "Ordered labels",
  palette = "RdBu",
  plot_ratio = 1.25
)

Arguments

psuper_obj	psupertime object, output from psupertime
extra_genes	List of genes to be plotted (these must be in the set of genes used for calculating psupertime, e.g. highly variable genes)
label_name	Description for the ordered labels in the legend (e.g. 'Developmental stage (days)')
palette	RColorBrewer palette to use
plot_ratio	ratio of columns to rows (default is 5:4)

Value

ggplot2 object

wmacnair/psupertime documentation built on July 10, 2020, 8:12 p.m.