plot_identified_genes_over_psupertime: Plots profiles of identified genes against psupertime.
In wmacnair/psupertime: Psupertime is supervised pseudotime for single cell RNAseq data
Description
Usage
Arguments
Value
View source: R/psupertime_plots.R
Description
Plots profiles of identified genes against psupertime.
Usage
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plot_identified_genes_over_psupertime(
psuper_obj,
label_name = "Ordered labels",
n_to_plot = 20,
palette = "RdBu",
plot_ratio = 1.25
)
Arguments
psuper_obj
Psupertime object, output from psupertime
label_name
Description for the ordered labels in the legend (e.g. 'Developmental stage (days)')
n_to_plot
Maximum number of genes to plot (default 20)
palette
RColorBrewer palette to use
plot_ratio
ratio of columns to rows (default is 5:4)
Value
ggplot2 object
wmacnair/psupertime documentation built on July 10, 2020, 8:12 p.m.
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Description Usage Arguments Value
View source: R/psupertime_plots.R
Description
Plots profiles of identified genes against psupertime.
Usage
1 2 3 4 5 6 7 | plot_identified_genes_over_psupertime(
psuper_obj,
label_name = "Ordered labels",
n_to_plot = 20,
palette = "RdBu",
plot_ratio = 1.25
)
|
Arguments
psuper_obj |
Psupertime object, output from psupertime |
label_name |
Description for the ordered labels in the legend (e.g. 'Developmental stage (days)') |
n_to_plot |
Maximum number of genes to plot (default 20) |
palette |
RColorBrewer palette to use |
plot_ratio |
ratio of columns to rows (default is 5:4) |
Value
ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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