tests/testthat/_snaps/analysis.md

In wmoldham/seahorse: Analyze Seahorse Bioenergetic Data

levels works

Code
  levels(sea, blanks = TRUE, outliers = TRUE)
Output
  # A tibble: 8,064 x 8
     measurement stage well  type  group  time sensor value
           <dbl> <fct> <chr> <chr> <fct> <dbl> <fct>  <dbl>
   1           1 basal A01   blank blank     0 O2      152.
   2           1 basal A01   blank blank    14 O2      152.
   3           1 basal A01   blank blank    28 O2      152.
   4           1 basal A01   blank blank    42 O2      152.
   5           1 basal A01   blank blank    55 O2      152.
   6           1 basal A01   blank blank    70 O2      152.
   7           1 basal A01   blank blank    83 O2      152.
   8           1 basal A01   blank blank    97 O2      152.
   9           1 basal A01   blank blank   111 O2      152.
  10           1 basal A01   blank blank   125 O2      152.
  # i 8,054 more rows

Code
  levels(sea, blanks = TRUE, outliers = FALSE)
Output
  # A tibble: 7,728 x 8
     measurement stage well  type  group  time sensor value
           <dbl> <fct> <chr> <chr> <fct> <dbl> <fct>  <dbl>
   1           1 basal A01   blank blank     0 O2      152.
   2           1 basal A01   blank blank    14 O2      152.
   3           1 basal A01   blank blank    28 O2      152.
   4           1 basal A01   blank blank    42 O2      152.
   5           1 basal A01   blank blank    55 O2      152.
   6           1 basal A01   blank blank    70 O2      152.
   7           1 basal A01   blank blank    83 O2      152.
   8           1 basal A01   blank blank    97 O2      152.
   9           1 basal A01   blank blank   111 O2      152.
  10           1 basal A01   blank blank   125 O2      152.
  # i 7,718 more rows

Code
  levels(sea, blanks = FALSE, outliers = FALSE)
Output
  # A tibble: 6,384 x 8
     measurement stage well  type   group  time sensor value
           <dbl> <fct> <chr> <chr>  <fct> <dbl> <fct>  <dbl>
   1           1 basal A02   sample A         0 O2      151.
   2           1 basal A02   sample A        14 O2      151.
   3           1 basal A02   sample A        28 O2      151.
   4           1 basal A02   sample A        42 O2      151.
   5           1 basal A02   sample A        55 O2      151.
   6           1 basal A02   sample A        70 O2      151.
   7           1 basal A02   sample A        83 O2      151.
   8           1 basal A02   sample A        97 O2      151.
   9           1 basal A02   sample A       111 O2      151.
  10           1 basal A02   sample A       125 O2      151.
  # i 6,374 more rows

rates works

Code
  rates(sea, blanks = TRUE, outliers = TRUE, normalize = TRUE)
Output
  # A tibble: 480 x 7
     measurement stage well  type   group rate  value
           <dbl> <fct> <chr> <chr>  <fct> <fct> <dbl>
   1           1 basal A02   sample A     OCR    13.4
   2           1 basal A03   sample A     OCR    12.2
   3           1 basal A04   sample A     OCR    15.1
   4           1 basal A05   sample A     OCR    16.4
   5           1 basal A06   sample B     OCR    25.1
   6           1 basal B01   sample B     OCR    28.7
   7           1 basal B02   sample B     OCR    41.6
   8           1 basal B03   sample B     OCR    48.5
   9           1 basal B05   sample C     OCR    59.4
  10           1 basal B06   sample C     OCR    37.4
  # i 470 more rows

Code
  rates(sea, blanks = FALSE, outliers = TRUE, normalize = TRUE)
Output
  # A tibble: 480 x 7
     measurement stage well  type   group rate  value
           <dbl> <fct> <chr> <chr>  <fct> <fct> <dbl>
   1           1 basal A02   sample A     OCR    13.4
   2           1 basal A03   sample A     OCR    12.2
   3           1 basal A04   sample A     OCR    15.1
   4           1 basal A05   sample A     OCR    16.4
   5           1 basal A06   sample B     OCR    25.1
   6           1 basal B01   sample B     OCR    28.7
   7           1 basal B02   sample B     OCR    41.6
   8           1 basal B03   sample B     OCR    48.5
   9           1 basal B05   sample C     OCR    59.4
  10           1 basal B06   sample C     OCR    37.4
  # i 470 more rows

Code
  rates(sea, blanks = TRUE, outliers = FALSE, normalize = TRUE)
Output
  # A tibble: 456 x 7
     measurement stage well  type   group rate  value
           <dbl> <fct> <chr> <chr>  <fct> <fct> <dbl>
   1           1 basal A02   sample A     OCR    13.4
   2           1 basal A03   sample A     OCR    12.2
   3           1 basal A04   sample A     OCR    15.1
   4           1 basal A05   sample A     OCR    16.4
   5           1 basal A06   sample B     OCR    25.1
   6           1 basal B01   sample B     OCR    28.7
   7           1 basal B02   sample B     OCR    41.6
   8           1 basal B03   sample B     OCR    48.5
   9           1 basal B06   sample C     OCR    37.4
  10           1 basal C01   sample C     OCR    35.7
  # i 446 more rows

Code
  rates(sea, blanks = TRUE, outliers = TRUE, normalize = FALSE)
Output
  # A tibble: 576 x 7
     measurement stage well  type   group rate   value
           <dbl> <fct> <chr> <chr>  <fct> <fct>  <dbl>
   1           1 basal A01   blank  blank OCR   -4.60 
   2           1 basal A02   sample A     OCR   13.4  
   3           1 basal A03   sample A     OCR   12.2  
   4           1 basal A04   sample A     OCR   15.1  
   5           1 basal A05   sample A     OCR   16.4  
   6           1 basal A06   sample B     OCR   25.1  
   7           1 basal B01   sample B     OCR   28.7  
   8           1 basal B02   sample B     OCR   41.6  
   9           1 basal B03   sample B     OCR   48.5  
  10           1 basal B04   blank  blank OCR   -0.591
  # i 566 more rows

wmoldham/seahorse documentation built on June 9, 2025, 11:36 a.m.