countTextLines: countTextLines: Counting lines in text files.
In wokai/rbamtools: An R package for reading and writing BAM (Binary alignment) files.
Description
Usage
Arguments
Details
Examples
Description
The countTextLines function takes a filename vector
and returns the number of lines contained in each file.
Usage
1
countTextLines(filenames)
Arguments
filenames
Character. Vector of file-names to be opened.
Details
Fastq files usually (but not guaranteed) contain four lines of
text for each read.
In many cases, this function can be used to count the number of
reads in a fastq file.
Examples
1
2
filename <- system.file("extdata", "test.fastq", package="rbamtools")
countTextLines(filename)
wokai/rbamtools documentation built on May 4, 2019, 9:46 a.m.
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Description Usage Arguments Details Examples
Description
The countTextLines function takes a filename vector and returns the number of lines contained in each file.
Usage
1 | countTextLines(filenames)
|
Arguments
filenames |
Character. Vector of file-names to be opened. |
Details
Fastq files usually (but not guaranteed) contain four lines of text for each read. In many cases, this function can be used to count the number of reads in a fastq file.
Examples
1 2 | filename <- system.file("extdata", "test.fastq", package="rbamtools")
countTextLines(filename)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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