createIdxBatch: createIdxBatch: Creation of index files for multiple BAM...
In wokai/rbamtools: An R package for reading and writing BAM (Binary alignment) files.
Description
Usage
Arguments
Author(s)
Examples
Description
The function takes a vector of BAM-file names
(plus optionally accompanying names of BAM-index-files) and checks for
existing BAM-index files.
When index files do not exist, the function creates the missing index files.
Usage
1
createIdxBatch(bam,idx=paste(bam,".bai",sep=""),rebuild=FALSE)
Arguments
bam
Filenames of BAM-files to be opened.
idx
Optional: Name of BAM-index files
rebuild
Optional: Logical value.
When TRUE the function rebuilds existing BAM-index files.
Author(s)
Wolfgang Kaisers
Examples
1
2
## Not run: bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
## Not run: createIdxBatch(bam)
wokai/rbamtools documentation built on May 4, 2019, 9:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Author(s) Examples
Description
The function takes a vector of BAM-file names (plus optionally accompanying names of BAM-index-files) and checks for existing BAM-index files. When index files do not exist, the function creates the missing index files.
Usage
1 | createIdxBatch(bam,idx=paste(bam,".bai",sep=""),rebuild=FALSE)
|
Arguments
bam |
Filenames of BAM-files to be opened. |
idx |
Optional: Name of BAM-index files |
rebuild |
Optional: Logical value.
When |
Author(s)
Wolfgang Kaisers
Examples
1 2 | ## Not run: bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
## Not run: createIdxBatch(bam)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.