Files in wokai/rbamtools
An R package for reading and writing BAM (Binary alignment) files.

ChangeLog
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS
R/.Rhistory
R/rbamtools.r
inst/extdata/accepted_hits.bam
inst/extdata/accepted_hits.bam.bai
inst/extdata/test.fastq
man/alignDepth-class.Rd man/as.data.frame-methods.Rd man/bamAlign-class.Rd man/bamAlign.Rd man/bamClose-methods.Rd man/bamCount.Rd man/bamCountAll.Rd man/bamGapList-class.Rd man/bamHeader-class.Rd man/bamHeaderText-class.Rd man/bamRange-class.Rd man/bamRange.Rd man/bamReader-class.Rd man/bamReader.Rd man/bamSort.Rd man/bamWriter-class.Rd man/bamWriter.Rd man/countNucs.Rd man/countTextLines.Rd man/createIdxBatch.Rd man/extractBamRegions.Rd man/extractRanges.Rd man/filename-methods.Rd man/gapList-class.Rd man/gapSiteList-class.Rd man/getHeaderText-methods.Rd man/getNextAlign-methods.Rd man/getQualDf.Rd man/getRefData.Rd man/getVal.Rd man/headerLine-class.Rd man/headerProgram-class.Rd man/headerReadGroup-class.Rd man/isOpen-methods.Rd man/nucStats.Rd man/rangeSegCount-class.Rd man/rangeToFastq.Rd man/rbamtools-package.Rd man/readPooledBamGapDf.Rd man/readPooledBamGaps.Rd man/readerToFastq.Rd man/refSeqDict-class.Rd man/setVal.Rd
src/Makevars
src/Makevars.win
src/align_counts.h
src/align_list.h
src/bitmask.h
src/gapSiteList.h
src/gapSiteListList.h
src/gap_list.h
src/rbamtools.c
src/rbamtools.h
src/samtools/LICENSE
src/samtools/bam.c
src/samtools/bam.h
src/samtools/bam_aux.c
src/samtools/bam_endian.h
src/samtools/bam_import.c
src/samtools/bam_index.c
src/samtools/bam_sort.c
src/samtools/bgzf.c
src/samtools/bgzf.h
src/samtools/faidx.c
src/samtools/faidx.h
src/samtools/khash.h
src/samtools/kseq.h
src/samtools/ksort.h
src/samtools/kstring.c
src/samtools/kstring.h
src/samtools/razf.c
src/samtools/razf.h
src/samtools/rdef.h
src/samtools/sam.c
src/samtools/sam.h
src/samtools/sam_header.c
src/samtools/sam_header.h
tests/test-all.R tests/test_bam_align.r tests/test_bam_header.r tests/test_bam_range.r tests/test_range_seg_count.r
vignettes/rbamtools.Rnw
vignettes/rbamtools.bib
wokai/rbamtools documentation built on May 28, 2017, 5:12 a.m.