Files in wokai/rbamtools
An R package for reading and writing BAM (Binary alignment) files.
ChangeLog
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS
R/.Rhistory
R/rbamtools.r
inst/extdata/accepted_hits.bam
inst/extdata/accepted_hits.bam.bai
inst/extdata/test.fastq
man/alignDepth-class.Rd
man/as.data.frame-methods.Rd
man/bamAlign-class.Rd
man/bamAlign.Rd
man/bamClose-methods.Rd
man/bamCount.Rd
man/bamCountAll.Rd
man/bamGapList-class.Rd
man/bamHeader-class.Rd
man/bamHeaderText-class.Rd
man/bamRange-class.Rd
man/bamRange.Rd
man/bamReader-class.Rd
man/bamReader.Rd
man/bamSort.Rd
man/bamWriter-class.Rd
man/bamWriter.Rd
man/countNucs.Rd
man/countTextLines.Rd
man/createIdxBatch.Rd
man/extractBamRegions.Rd
man/extractRanges.Rd
man/filename-methods.Rd
man/gapList-class.Rd
man/gapSiteList-class.Rd
man/getHeaderText-methods.Rd
man/getNextAlign-methods.Rd
man/getQualDf.Rd
man/getRefData.Rd
man/getVal.Rd
man/headerLine-class.Rd
man/headerProgram-class.Rd
man/headerReadGroup-class.Rd
man/isOpen-methods.Rd
man/nucStats.Rd
man/rangeSegCount-class.Rd
man/rangeToFastq.Rd
man/rbamtools-package.Rd
man/readPooledBamGapDf.Rd
man/readPooledBamGaps.Rd
man/readerToFastq.Rd
man/refSeqDict-class.Rd
man/setVal.Rd
src/Makevars
src/Makevars.win
src/align_counts.h
src/align_list.h
src/bitmask.h
src/gapSiteList.h
src/gapSiteListList.h
src/gap_list.h
src/rbamtools.c
src/rbamtools.h
src/samtools/LICENSE
src/samtools/bam.c
src/samtools/bam.h
src/samtools/bam_aux.c
src/samtools/bam_endian.h
src/samtools/bam_import.c
src/samtools/bam_index.c
src/samtools/bam_sort.c
src/samtools/bgzf.c
src/samtools/bgzf.h
src/samtools/faidx.c
src/samtools/faidx.h
src/samtools/khash.h
src/samtools/kseq.h
src/samtools/ksort.h
src/samtools/kstring.c
src/samtools/kstring.h
src/samtools/razf.c
src/samtools/razf.h
src/samtools/rdef.h
src/samtools/sam.c
src/samtools/sam.h
src/samtools/sam_header.c
src/samtools/sam_header.h
tests/test-all.R
tests/test_bam_align.r
tests/test_bam_header.r
tests/test_bam_range.r
tests/test_range_seg_count.r
vignettes/rbamtools.Rnw
vignettes/rbamtools.bib
