The function counts occurrence of the Nucleotides A,C,G,T for
whole BAM file from
bamReader object or a list of BAM files.
Letters different from A,C,G,T are subsumed in the value N.
The function returns a
data.frame with 8 columns.
The names indicate which position contains the count value each nucleotide.
The function also calculates GC-content and AT/GC ratio which make up the
last two columns.
The returned data.frame contains one row for each reference sequence
(when used for
bamReader) or one row for each given BAM file name.
Optional name for BAM-index files (argument name=idxInfiles).
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