genoVarCovarMatFunc: genoVarCovarMatFunc
In wolfemd/predCrossVar: Prediction of family genomic variances and covariances
Description
Usage
Arguments
Value
Examples
View source: R/utility_functions.R
Description
Compute the *p SNPs*-by-*p SNPs* variance-covariance matrix of SNP dosages.
This is an estimator of the LD between loci within a given population.
Usage
1
Arguments
Z
column-centered matrix of SNP dosages. Assumes SNPs in Z were originally coded 0, 1, 2 were column centered.
Value
NOTE: this matrix is going to be big in practice.
The *p SNPs*-by-*p SNPs* variance-covariance matrix of SNP dosages.
may be worth computing in an R session using multi-threaded BLAS
Examples
1
2
Z<-centerDosage(M)
genoVarCovarMat<-genoVarCovarMatFunc(Z)
wolfemd/predCrossVar documentation built on Dec. 21, 2020, 10:14 a.m.
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Description Usage Arguments Value Examples
View source: R/utility_functions.R
Description
Compute the *p SNPs*-by-*p SNPs* variance-covariance matrix of SNP dosages. This is an estimator of the LD between loci within a given population.
Usage
1 |
Arguments
Z |
column-centered matrix of SNP dosages. Assumes SNPs in Z were originally coded 0, 1, 2 were column centered. |
Value
NOTE: this matrix is going to be big in practice. The *p SNPs*-by-*p SNPs* variance-covariance matrix of SNP dosages. may be worth computing in an R session using multi-threaded BLAS
Examples
1 2 | Z<-centerDosage(M)
genoVarCovarMat<-genoVarCovarMatFunc(Z)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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