genomicVarA_m1: genomicVarA_m1

In wolfemd/predCrossVar: Prediction of family genomic variances and covariances

Description

Compute standard genomic variance term, what Lehermeier called Method 1 or "M1". LD is not accounted for. SNP effects are assumed _i.i.d._.

Usage

genomicVarA_m1(snpVarA, freq)

Arguments

snpVarA	vector of _additive_ SNP effects estimate. Ideally vector is named with SNP IDs and matches the order of related SNP matrices.
freq	vector of allele frequencies. Must be in same order as snp effects

Value

additive genomic variance component

wolfemd/predCrossVar documentation built on Dec. 21, 2020, 10:14 a.m.