makeKinship: makeKinship function

In wolfemd/predCrossVar: Prediction of family genomic variances and covariances

Description

function to create a additive or dominance kinship matrix from a AlphaSimR pop-class object. A wrapper for the kinship() function.

Usage

makeKinship(pop, SP, type, snpsORqtl = "snps")

Arguments

pop	pop-class object from AlphaSimR
SP	simulation parameters from AlphaSimR
type	string, "add" or "dom". type="add" gives same as rrBLUP::A.mat(), i.e. Van Raden, Method 1. type="dom" gives classical parameterization according to Vitezica et al. 2013.
snpsORqtl	string, "snps" (default) or "qtl". Determines which loci are used to compute the GRM.

Examples

 K<-makeKinship(pop, SP, type="add")

wolfemd/predCrossVar documentation built on Dec. 21, 2020, 10:14 a.m.