hypergeometricTestVector: Hypergeomatric Test of Terms and Genes...
In wolfsonliu/enrich: Gene list enrichment on KEGG pathway, GO term, Transcript Factor Targets and so on.
Usage
Arguments
Details
Value
See Also
View source: R/hypergeometricTestVector.r
Usage
1
2
hypergeometricTestVector(drawn.ball, urns, total.ball.num,
adj.p.method = "BH")
Arguments
drawn.ball
vector of items to be tested, like drawn balls.
urns
lists of items contained in different sets, like different urns
contains balls.
total.ball.num
the background number of items.
adj.p.method
adjusted p value methods in p.adjust, including
c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"),
default to be "BH".
Details
This function is used to do many hypergeometric tests,
and calculate both the p value and adjusted p value.
Value
the returned result will be a data.frame,
containing numbers of drawn, background number, p value and adjusted p value,
with the same row number as the length of input urns.
The order of results will be the same with urns,
and the names will also be the same if has.
See Also
wolfsonliu/enrich documentation built on May 4, 2019, 9:47 a.m.
R Package Documentation
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Usage Arguments Details Value See Also
View source: R/hypergeometricTestVector.r
Usage
1 2 | hypergeometricTestVector(drawn.ball, urns, total.ball.num,
adj.p.method = "BH")
|
Arguments
drawn.ball |
vector of items to be tested, like drawn balls. |
urns |
lists of items contained in different sets, like different urns contains balls. |
total.ball.num |
the background number of items. |
adj.p.method |
adjusted p value methods in |
Details
This function is used to do many hypergeometric tests, and calculate both the p value and adjusted p value.
Value
the returned result will be a data.frame,
containing numbers of drawn, background number, p value and adjusted p value,
with the same row number as the length of input urns.
The order of results will be the same with urns,
and the names will also be the same if has.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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