listKEGGOrganism: List available organisms of KEGG website. 'listKEGGOrganism'...
In wolfsonliu/enrich: Gene list enrichment on KEGG pathway, GO term, Transcript Factor Targets and so on.
Usage
Arguments
Details
Value
See Also
Examples
Usage
1
listKEGGOrganism(origin = FALSE)
Arguments
origin
bool, if TRUE, return the file fetched from KEGG website.
If FALSE, the file contents will be reordered.
Details
listKEGGOrganism using API of KEGG website
("http://rest.kegg.jp/list/organism") to fetch the lists of organisms.
The three-character KEGG organism code is used as the start 3 characters
of KEGG pathway ID.
Value
the returned result will be a data.frame, containing the information of
organisms in KEGG website. The data.frame has organisms' ID,
organisms' three characters code, and organisms' scientific and English names.
See Also
Examples
1
2
3
organism <- listKEGGOrganism()
organism
wolfsonliu/enrich documentation built on May 4, 2019, 9:47 a.m.
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Usage Arguments Details Value See Also Examples
Usage
1 | listKEGGOrganism(origin = FALSE)
|
Arguments
origin |
bool, if TRUE, return the file fetched from KEGG website. If FALSE, the file contents will be reordered. |
Details
listKEGGOrganism using API of KEGG website
("http://rest.kegg.jp/list/organism") to fetch the lists of organisms.
The three-character KEGG organism code is used as the start 3 characters
of KEGG pathway ID.
Value
the returned result will be a data.frame, containing the information of organisms in KEGG website. The data.frame has organisms' ID, organisms' three characters code, and organisms' scientific and English names.
See Also
Examples
1 2 3 | organism <- listKEGGOrganism()
organism
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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