listKEGGPathway: List available pathways of KEGG website. 'listKEGGPathway'...
In wolfsonliu/enrich: Gene list enrichment on KEGG pathway, GO term, Transcript Factor Targets and so on.
Usage
Arguments
Details
Value
See Also
Examples
Usage
1
listKEGGPathway(organism, origin = FALSE)
Arguments
organism
character, 3 characters KEGG organism code.
origin
bool, if TRUE, return the file fetched from KEGG website.
If FALSE, the file contents will be reordered.
Details
listKEGGOrganism using API of KEGG website
("http://rest.kegg.jp/list/pathway/") to fetch the lists of available
pathways of certain organism. The parameter, organism, could be KEGG organism
code, normal English name, scientific name. Organisms in KEGG website could be
abtained from listKEGGOrganism.
Value
data.frame with KEGG pathway IDs and names.
See Also
Examples
1
2
3
pathways <- listKEGGPathway()
pathways
wolfsonliu/enrich documentation built on May 4, 2019, 9:47 a.m.
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Usage Arguments Details Value See Also Examples
Usage
1 | listKEGGPathway(organism, origin = FALSE)
|
Arguments
organism |
character, 3 characters KEGG organism code. |
origin |
bool, if TRUE, return the file fetched from KEGG website. If FALSE, the file contents will be reordered. |
Details
listKEGGOrganism using API of KEGG website
("http://rest.kegg.jp/list/pathway/") to fetch the lists of available
pathways of certain organism. The parameter, organism, could be KEGG organism
code, normal English name, scientific name. Organisms in KEGG website could be
abtained from listKEGGOrganism.
Value
data.frame with KEGG pathway IDs and names.
See Also
Examples
1 2 3 | pathways <- listKEGGPathway()
pathways
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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