AAAlphabet-class: Class "AAAlphabet" Amino Acid Alphabet

In wolski/pairseqsim: pairwise sequence alignment similarity simple.

Description

Chars alowed in a protein sequence. It is used by the method initialize of class AASequence to check if the chars in the sequence are known (recognized by the package).

Objects from the Class

Objects can be created by calls of the form new("AAAlphabet", ...).

Slots

.Data:

Object of class "character" Chars allowed in protein sequences

info:

Object of class "character" "AAAlphabet"

Extends

Class "character", directly.

Methods

levels

signature(x = "AAAlphabet"): internal

show

signature(object = "AAAlphabet"): show

Author(s)

Witold E. Wolski [e-mail]

References

http://r4proteomics.sourcefroge.net

Examples

new("AAAlphabet")

wolski/pairseqsim documentation built on May 4, 2019, 9:47 a.m.